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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73083519_73084195_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73083519 - 73084195
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTTCCAAATT
Flanking Amino Acid:
DQVSQPNKHSSSLSVQSNTV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
68.8
0.42
1
69.3
35.8
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
52.3
0.15
2
75.59
41.9

Associated Gene:

Gene:
PACSIN2
Ensembl Gene ID:
ENSAPLG00000009134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009543
73061864 - 73090550
28687