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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73084313_73085259_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73084313 - 73085259
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTGGTGAA
5'SS Class:
major
3'SS Sequence:
AAATTGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGTAATTTAAAA
Flanking Amino Acid:
VSEKEDNKIKNVSSYEKNQS
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.2
63.4
36.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.2
0.45
1
66.8
44
Minor 5ss
28.7
-2.4
3.2
32.2
36.4
Minor BPS
51.7
0.05
1.6
62.06
37.1

Associated Gene:

Gene:
PACSIN2
Ensembl Gene ID:
ENSAPLG00000009134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009543
73061864 - 73090550
28687