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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73106561_73109394_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
73106561 - 73109394
Intron Length:
2834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGTTTGCC
5'SS Class:
weak_major
3'SS Sequence:
GTGTTCTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
GGNANAVCTLDLLFFHQHGC
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.1
48.5
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
0.9
68.9
37.2
Minor 5ss
35.9
-1.6
3.1
40.6
39.7
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226