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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73109528_73110801_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73109528 - 73110801
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AAAATACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTACCAAAATA
Flanking Amino Acid:
TQATRKHGTDLWTDGCGMPP
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
60
0.23
1
49
44
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
49.2
-0
2
64.77
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226