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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73110886_73113972_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
73110886 - 73113972
Intron Length:
3087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGATT
5'SS Class:
major
3'SS Sequence:
TTTCAATGCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTCAATG
Flanking Amino Acid:
DFFASHVSPKNTEWVLSEPQ
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
77.5
36.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
59.4
0.21
1.1
59.8
39.6
Minor 5ss
43.6
-0.7
3.3
65.5
45.8
Minor BPS
64.5
0.32
1.5
70.72
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226