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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73114055_73114479_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73114055 - 73114479
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTCATCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTATTCTTAACT
Flanking Amino Acid:
ASENVPECYEGGPEHGPSVD
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.5
0.62
0.9
73.4
37
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
82.5
1.1
1
89.57
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226