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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73114540_73116042_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73114540 - 73116042
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTAATCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GTATGTTTAATC
Flanking Amino Acid:
YLSTSPKAALENTTFIKKKP
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.3
40.4
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
77.2
0.61
0.9
70.8
39.4
Minor 5ss
34.1
-1.8
3.2
49.3
46.5
Minor BPS
60
0.29
1.7
67.59
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226