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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73116090_73117440_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
73116090 - 73117440
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTAATAAATCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTTCTAATA
Flanking Amino Acid:
KKKPNQVKKGLGAKKGGLGA
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
51.1
0.03
1.2
47.3
43.1
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
60.7
0.33
1.6
72.09
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226