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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73117587_73120381_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73117587 - 73120381
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCTACTAATA
Flanking Amino Acid:
SSKQTGKEEPLVSSLRLAYR
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.6
0.69
0.9
73.5
41.9
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
51.1
0.03
1.9
70.61
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226