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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73121256_73125487_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73121256 - 73125487
Intron Length:
4232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
EDSYISSSSSRYCDSSDLKS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226