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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73126918_73128075_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73126918 - 73128075
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAATT
Flanking Amino Acid:
MYFGRQDHADYEARARLERL
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.5
0.57
0.9
66.8
43.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
69.8
0.7
1.5
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226