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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73128167_73131982_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73128167 - 73131982
Intron Length:
3816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTGTCTTCATG
Flanking Amino Acid:
LFEDQKKQPAGSYNITNVLP
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
83.7
34.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.5
0.69
0.7
78.7
29.4
Minor 5ss
40.7
-1
3.1
56.6
42.9
Minor BPS
55.3
0.02
1.9
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014423
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015079
73106520 - 73132745
26226