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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73197041_73198922_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73197041 - 73198922
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTGCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
ATGTATCTAAGG
Flanking Amino Acid:
MGAGLSTLRWVVTYPIW
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
44.1
-0.5
2.1
51.13
43.2

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220