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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73199055_73202339_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73199055 - 73202339
Intron Length:
3285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TGATGATTATTT
Flanking Amino Acid:
KYALRLIDKEEVSHDTRRFR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
46.1
-0.2
2.2
66.81
43.8

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220