About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73202413_73204768_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73202413 - 73204768
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TACCTGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACCT
Flanking Amino Acid:
SVDHVLGLPIGQHIYLSARI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
64.2
0.32
1
57.4
37.4
Minor 5ss
41.8
-0.9
3
59.5
44.9
Minor BPS
64.7
0.54
1.9
88.42
36.6

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220