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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73204876_73205861_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73204876 - 73205861
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
DKGFVDLVVKIYFKGVHPKF
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.4
0.77
0.9
81.3
34.8
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220