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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73207307_73209544_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73207307 - 73209544
Intron Length:
2238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
CAGAGCATAATC
Flanking Amino Acid:
TVCQLLFANQTEKDILLRSE
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.5
0.66
0.8
73
31.9
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
43.6
-0.5
2
48.91
41.3

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220