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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73209645_73211066_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73209645 - 73211066
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
CWYTLDRAPENWEYSQGFVS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.9
30.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
42.3
-0.9
3.1
58.2
40.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
CYB5R3
Ensembl Gene ID:
ENSAPLG00000009751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010170
73197020 - 73211239
14220