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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73222231_73222851_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73222231 - 73222851
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGCGT
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGAACCTTGACT
Flanking Amino Acid:
AFSEGINNLTHMLKEDEMFK
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.4
46.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.8
74.3
35.8
Minor 5ss
34.7
-1.7
3.5
53.2
44.7
Minor BPS
73.3
0.82
1.3
82.12
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009745
73222144 - 73271243
49100