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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73224913_73226148_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73224913 - 73226148
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
CTCCTGTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GTCTCCTTAACT
Flanking Amino Acid:
NCLRRRPSDESSVTPSEVTQ
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
72.5
0.51
0.8
67.3
32.6
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
87.2
1.25
1
92.9
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009745
73222144 - 73271243
49100