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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73226272_73230172_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73226272 - 73230172
Intron Length:
3901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGTTTACTAACA
Flanking Amino Acid:
DGRMLHYMSMDDLLSLKVVS
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75
0.56
0.9
71.7
32.9
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
56.8
0.21
1.9
74.1
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009745
73222144 - 73271243
49100