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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73230528_73231804_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73230528 - 73231804
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTTTCCTTACTT
Flanking Amino Acid:
LQASQQDLEKELGIKHPLHR
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
81
0.7
0.8
75.5
32.9
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
74.2
0.84
1.6
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009745
73222144 - 73271243
49100