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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73259995_73271174_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73259995 - 73271174
Intron Length:
11180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ACAATATAAATT
Flanking Amino Acid:
IHGHCIWLNKTNGHLSGNGD
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
44.3
-0.3
1.8
56.47
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009745
73222144 - 73271243
49100