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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73362894_73363580_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73362894 - 73363580
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTCTGATCT
Flanking Amino Acid:
SPALTVNCSNVPDKELTQLC
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.6
0.6
0.8
73.8
36.5
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
63
0.49
1.7
81.93
39.2

Associated Gene:

Gene:
ARNTL2
Ensembl Gene ID:
ENSAPLG00000008758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009131
73361675 - 73395012
33338