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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73374898_73375884_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73374898 - 73375884
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTCTAACA
Flanking Amino Acid:
MDGKFVYVDQCATAILGYLP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
0.9
77.9
35.1
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
64.8
0.46
1.6
76.45
34.3

Associated Gene:

Gene:
ARNTL2
Ensembl Gene ID:
ENSAPLG00000008758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009131
73361675 - 73395012
33338