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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73376126_73377827_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73376126 - 73377827
Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
GTCTTTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGAACCGTAACT
Flanking Amino Acid:
KECLPNPKKKDHRKYCTIHC
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.2
0.61
0.9
78
35.2
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
59.7
0.38
2.1
78.8
42.7

Associated Gene:

Gene:
ARNTL2
Ensembl Gene ID:
ENSAPLG00000008758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009131
73361675 - 73395012
33338