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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73381004_73381669_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73381004 - 73381669
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTTTTAAGA
Flanking Amino Acid:
DDELRQLILRAADGFLFVVG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
61.7
0.36
1.6
68.54
38.5

Associated Gene:

Gene:
ARNTL2
Ensembl Gene ID:
ENSAPLG00000008758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009131
73361675 - 73395012
33338