About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73386036_73391224_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73386036 - 73391224
Intron Length:
5189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AAGACTTTATAT
Flanking Amino Acid:
RKRKGSDSDNQSEDEEHLKI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84
0.77
0.8
77.9
36.6
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
48.3
-0
1.7
61.66
41.9

Associated Gene:

Gene:
ARNTL2
Ensembl Gene ID:
ENSAPLG00000008758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009131
73361675 - 73395012
33338