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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73416574_73418843_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73416574 - 73418843
Intron Length:
2270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCGCCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
ISEKAKDLILRFCTDSENRI
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.5
0.66
0.8
76.2
32.4
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
STK38L
Ensembl Gene ID:
ENSAPLG00000008495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008872
73414592 - 73430300
15709