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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73419557_73420442_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73419557 - 73420442
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAA
Flanking Amino Acid:
ETWKKNRRQLAYSTVGTPDY
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.8
80.4
36.9
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
66
0.5
1.3
70.35
35.2

Associated Gene:

Gene:
STK38L
Ensembl Gene ID:
ENSAPLG00000008495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008872
73414592 - 73430300
15709