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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73420505_73421310_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73420505 - 73421310
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTCTAAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATTCTCTAAACT
Flanking Amino Acid:
NLTHNPPSDFSFQNMNSKRK
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
65.8
0.36
1
60.7
39.3
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
66.9
0.61
1.6
83.49
37.3

Associated Gene:

Gene:
STK38L
Ensembl Gene ID:
ENSAPLG00000008495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008872
73414592 - 73430300
15709