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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73423116_73426214_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
73423116 - 73426214
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
TAAAAAATTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATTCTTTAATA
Flanking Amino Acid:
RKADMLEKEQVAHIRAERDI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
58.7
0.2
1
53.3
45.2
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
78.5
0.89
1
78.88
30.8

Associated Gene:

Gene:
STK38L
Ensembl Gene ID:
ENSAPLG00000008495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008872
73414592 - 73430300
15709