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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73426983_73428250_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73426983 - 73428250
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TGTGTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATGACTTAAAT
Flanking Amino Acid:
MEEEGLADEEKKLRRSQHAR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.6
0.53
0.9
65.9
40.9
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
58.6
0.35
1.7
74.36
41.6

Associated Gene:

Gene:
STK38L
Ensembl Gene ID:
ENSAPLG00000008495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008872
73414592 - 73430300
15709