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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73522592_73525018_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73522592 - 73525018
Intron Length:
2427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AGATCCTTACTT
Flanking Amino Acid:
PSEESTAALQAASLYRLEEE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.5
0.53
1
74
34.2
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
65
0.55
1.6
76.16
40.4

Associated Gene:

Gene:
MED21
Ensembl Gene ID:
ENSAPLG00000017333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031211
73522415 - 73530052
7638