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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73525120_73529677_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73525120 - 73529677
Intron Length:
4558

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATT
Flanking Amino Acid:
NKDQPANPTEEYAQLFAALI
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.9
81.8
31.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.7
0.49
1.1
71.5
37.7
Minor 5ss
21.1
-3.3
3.6
33
41.9
Minor BPS
71.8
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
MED21
Ensembl Gene ID:
ENSAPLG00000017333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031211
73522415 - 73530052
7638