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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73537237_73538238_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73537237 - 73538238
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGATATCC
5'SS Class:
major
3'SS Sequence:
CTTGCTTCTAGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TATGGCTGTACT
Flanking Amino Acid:
FQVHAQQNSVQLSQTLMPAC
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
60.2
32.8
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
60.3
0.23
1.7
68.4
37.4
Minor 5ss
34
-1.8
3
40.1
39.8
Minor BPS
46.3
-0.2
2.3
69.78
46.7

Associated Gene:

Gene:
TM7SF3
Ensembl Gene ID:
ENSAPLG00000008163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030035
73534325 - 73547343
13019