About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73539068_73539486_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73539068 - 73539486
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTTCTTATTT
Flanking Amino Acid:
TAISIPYMEKDPIPGGCNLE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.8
77.1
36.8
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
65
0.55
1.6
77.4
39.8

Associated Gene:

Gene:
TM7SF3
Ensembl Gene ID:
ENSAPLG00000008163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019491
73534325 - 73547343
13019
ENSAPLT00000008496
73534940 - 73547343
12404
ENSAPLT00000045460
73533707 - 73547343
13637
ENSAPLT00000030035
73534325 - 73547343
13019