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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73541280_73542507_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73541280 - 73542507
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ATGCTGATAACC
Flanking Amino Acid:
VDLVDNCSSLSKLSTKIFFT
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
63.8
43.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
41.8
-0.9
2.8
54.9
43.3
Minor BPS
45.1
-0.3
2.2
58.73
40.1

Associated Gene:

Gene:
TM7SF3
Ensembl Gene ID:
ENSAPLG00000008163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030035
73534325 - 73547343
13019
ENSAPLT00000019491
73534325 - 73547343
13019
ENSAPLT00000008496
73534940 - 73547343
12404
ENSAPLT00000045460
73533707 - 73547343
13637