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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73557953_73561451_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73557953 - 73561451
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
TTATATGGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATAT
Flanking Amino Acid:
IVKLKEQHSKELQVHVDQIT
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.4
0.3
1
62.2
43.8
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
54
0.2
1.9
75.58
40.7

Associated Gene:

Gene:
FGFR1OP2
Ensembl Gene ID:
ENSAPLG00000007905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008214
73556113 - 73567012
10900