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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73561595_73562665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73561595 - 73562665
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGAATTTTAAAA
Flanking Amino Acid:
QIRELQQENKELRTSLEEHQ
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.6
0.37
1
63
37.9
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
56.5
0.2
1.4
62.79
36.8

Associated Gene:

Gene:
FGFR1OP2
Ensembl Gene ID:
ENSAPLG00000007905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008214
73556113 - 73567012
10900