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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73564106_73567008_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73564106 - 73567008
Intron Length:
2903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGCGGA
5'SS Class:
major
3'SS Sequence:
TTCTAACCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CATTTCTAACCT
Flanking Amino Acid:
MKMSCTIEKAL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
53.1
40.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.3
0.55
0.8
71.3
34.4
Minor 5ss
31.5
-2.1
3.3
33.8
43
Minor BPS
52.1
0.14
2
72.02
45.1

Associated Gene:

Gene:
FGFR1OP2
Ensembl Gene ID:
ENSAPLG00000007905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008214
73556113 - 73567012
10900