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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73571022_73571796_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
73571022 - 73571796
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCTTTAACT
Flanking Amino Acid:
WTQEDQNLQELMAALAAVGP
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
38.1
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
75.1
0.57
0.9
71.3
38.6
Minor 5ss
65
0.51
2.2
74.3
35.6
Minor BPS
87.7
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158