About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73572000_73573144_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73572000 - 73573144
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTATA
5'SS Class:
major
3'SS Sequence:
AACTTCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTATATTCAACT
Flanking Amino Acid:
GRIICITNAKSDSHVRMLED
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.1
34.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.8
0.56
0.9
66.4
39.8
Minor 5ss
38.3
-1.3
3
51.6
44.9
Minor BPS
57.6
0.32
1.7
75.32
40.8

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158