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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73574140_73575694_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73574140 - 73575694
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AATCCATTAATA
Flanking Amino Acid:
SLVSDRPKKELSPVLTSEVH
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72.8
0.51
0.9
65.1
41
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
62.9
0.4
1.6
70.3
35

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158