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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73577572_73581033_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73577572 - 73581033
Intron Length:
3462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTAATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTGGCTTAATA
Flanking Amino Acid:
KEAHVDFLKSGDNHVGGNSR
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
77
0.61
0.9
70.1
39.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
60.6
0.33
1.9
70.44
42.7

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158