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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73584619_73585409_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73584619 - 73585409
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATTC
5'SS Class:
major
3'SS Sequence:
TGGTTATCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAATTCCTAATT
Flanking Amino Acid:
GGRVTDYRITDFGEFMRENR
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.5
0.35
1
64.5
41.6
Minor 5ss
44.7
-0.6
3.1
65.4
39.7
Minor BPS
59.2
0.37
1.6
73.13
37.4

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158