About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73587349_73588521_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
73587349 - 73588521
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCAAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TCTTGCTTCACT
Flanking Amino Acid:
EQDKPWQESERLKGLLDREK
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
51.4
0.03
1.1
52.4
34.9
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
61.9
0.46
2.2
83.33
44.1

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158