About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73588662_73589349_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73588662 - 73589349
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
CATGCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATAACTTTAACT
Flanking Amino Acid:
DEMPVVEKAKGPMSLLSLWS
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64.7
0.33
1
60
40.3
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
75.7
0.88
1.2
84.3
35.8

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158