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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73589486_73590434_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73589486 - 73590434
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TCATCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGATCCTTACCA
Flanking Amino Acid:
ELYQHLKEENGLETTENGKA
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
40
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79.3
0.66
0.9
76.6
37.2
Minor 5ss
43.7
-0.7
2.5
53.2
43.6
Minor BPS
70.9
0.65
1.6
77.27
39.3

Associated Gene:

Gene:
INTS13
Ensembl Gene ID:
ENSAPLG00000007349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007657
73569317 - 73590474
21158