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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73637725_73669448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73637725 - 73669448
Intron Length:
31724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
GTTTTAGTAAAT
Flanking Amino Acid:
GSVNGFISTLGLVDDRCVVQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
48.3
-0
2.3
74.95
41.3

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106